LINC01239

Across TCGA patient cohorts, LINC01239 mutation is significantly associated with the RNA expression of many other genes, with 8 significant associations in total. SKCM shows the largest number of these associations.

The most reproducible LINC01239-associated genes across cancer lineages are OR13H1, RNU4-15P, and RNU6-527P. Each is linked with LINC01239 in more than 1 cancer types. Because this analysis shows association rather than direction, both LINC01239-to-partner and partner-to-LINC01239 results are reported.

Each partner links to its own Q-omics profile. The box plot shows the strongest example, OR13H1 grouped by LINC01239-low versus LINC01239-high in SKCM.

mutation associated genes by consensus

Ranked by combined sampling and lineage consensus. X-score (LINC01239→partner) and Y-score (partner→LINC01239) are standardized regression coefficients; both directions are reported because the association is undirected. p-values are from the association test.

Lineage	Partner gene	X-score	Y-score	p(X)	p(Y)	Sampling consensus	Lineage consensus
SKCM	OR13H1 →	+0.056	+5.680	<.001	.003	3	1
SKCM	RNU4-15P →	+0.334	+5.970	<.001	.002	3	1
SKCM	RNU6-527P →	+0.436	+5.362	<.001	.005	3	1
SKCM	TRAJ46 →	+0.535	+5.594	<.001	.004	3	1
LUAD	RNU6-587P →	+0.292	+7.930	<.001	.008	3	1
SKCM	RPL31P59 →	+0.155	+5.680	<.001	.003	3	1

Each partner links to its Q-omics profile. Showing the 6 strongest of 8 associations by consensus.

OR13H1 by LINC01239 expression — SKCM

Explore this box plot interactively →