LINC00997

Across TCGA patient cohorts, LINC00997 mutation is significantly associated with the RNA expression of many other genes, with 84 significant associations in total. UCEC shows the largest number of these associations.

The most reproducible LINC00997-associated genes across cancer lineages are CKS1BP6, MAP3K9, and COX6CP3. Each is linked with LINC00997 in more than 1 cancer types. Because this analysis shows association rather than direction, both LINC00997-to-partner and partner-to-LINC00997 results are reported.

Each partner links to its own Q-omics profile. The box plot shows the strongest example, CKS1BP6 grouped by LINC00997-low versus LINC00997-high in UCEC.

mutation associated genes by consensus

Ranked by combined sampling and lineage consensus. X-score (LINC00997→partner) and Y-score (partner→LINC00997) are standardized regression coefficients; both directions are reported because the association is undirected. p-values are from the association test.

Lineage	Partner gene	X-score	Y-score	p(X)	p(Y)	Sampling consensus	Lineage consensus
UCEC	CKS1BP6 →	+0.560	+3.089	<.001	.003	3	1
UCEC	MAP3K9 →	+0.635	+3.226	.004	.009	3	1
UCEC	COX6CP3 →	+0.204	+3.092	.004	.003	3	1
UCEC	MIR98 →	+0.462	+3.216	<.001	.002	3	1
UCEC	MIR6124 →	+0.418	+2.766	.003	.007	3	1
UCEC	STMN1P1 →	+0.538	+3.330	.001	.009	3	1

Each partner links to its Q-omics profile. Showing the 6 strongest of 84 associations by consensus.

CKS1BP6 by LINC00997 expression — UCEC

Explore this box plot interactively →