LINC00939

Across TCGA patient cohorts, LINC00939 RNA expression is significantly associated with the protein abundance of many other proteins, with 8,379 significant associations in total. LSCC shows the largest number of these associations.

The most reproducible LINC00939-associated proteins across cancer lineages are ARHGEF16_S230, PMVK, and PSMA5_S16. Each is linked with LINC00939 in more than 3 cancer types. Because this analysis shows association rather than direction, both LINC00939-to-partner and partner-to-LINC00939 results are reported.

Each partner links to its own Q-omics profile. The scatter plot shows the strongest example, LINC00939 versus ARHGEF16_S230 in CCRCC, with a Pearson correlation of 0.43.

RNA expression associated proteins by consensus

Ranked by combined sampling and lineage consensus. X-score (LINC00939→partner) and Y-score (partner→LINC00939) are standardized regression coefficients; both directions are reported because the association is undirected. p-values are from the association test.

Lineage	Partner protein	X-score	Y-score	p(X)	p(Y)	Sampling consensus	Lineage consensus
CCRCC	ARHGEF16_S230 →	+0.676	+0.721	<.001	.003	3	3
GBM	PMVK →	+0.234	+0.183	.009	.005	3	3
GBM	PSMA5_S16 →	-0.719	-0.218	.005	.004	2	4
HNSC	PAXBP1_S557 →	+0.250	+0.480	<.001	.001	3	3
GBM	ATP11A →	-0.417	-0.343	<.001	<.001	3	3
OV	FAM83B_S729 →	+2.567	+0.685	.009	.004	3	3

Each partner links to its Q-omics profile. Showing the 6 strongest of 8,379 associations by consensus.

LINC00939 vs ARHGEF16_S230 — CCRCC

Explore this scatter interactively →