LINC00896

Across TCGA patient cohorts, LINC00896 mutation is significantly associated with the RNA expression of many other genes, with 9 significant associations in total. UCEC shows the largest number of these associations.

The most reproducible LINC00896-associated genes across cancer lineages are MIR3929, RN7SL680P, and RNU6-1228P. Each is linked with LINC00896 in more than 1 cancer types. Because this analysis shows association rather than direction, both LINC00896-to-partner and partner-to-LINC00896 results are reported.

Each partner links to its own Q-omics profile. The box plot shows the strongest example, MIR3929 grouped by LINC00896-low versus LINC00896-high in UCEC.

mutation associated genes by consensus

Ranked by combined sampling and lineage consensus. X-score (LINC00896→partner) and Y-score (partner→LINC00896) are standardized regression coefficients; both directions are reported because the association is undirected. p-values are from the association test.

Lineage	Partner gene	X-score	Y-score	p(X)	p(Y)	Sampling consensus	Lineage consensus
UCEC	MIR3929 →	+0.915	+5.621	<.001	.004	3	1
UCEC	RN7SL680P →	+0.354	+5.133	<.001	.008	3	1
UCEC	RNU6-1228P →	+0.557	+7.049	<.001	<.001	3	1
UCEC	RNU2-48P →	+0.758	+7.245	<.001	<.001	3	1
UCEC	RPS27P1 →	+0.266	+5.358	<.001	.006	3	1
UCEC	RPL17P14 →	+0.156	+5.771	.002	.003	3	1

Each partner links to its Q-omics profile. Showing the 6 strongest of 9 associations by consensus.

MIR3929 by LINC00896 expression — UCEC

Explore this box plot interactively →