Across TCGA patient cohorts, LINC00654 mutation is significantly associated with the RNA expression of many other genes, with 45 significant associations in total. UCEC shows the largest number of these associations.

The most reproducible LINC00654-associated genes across cancer lineages are RNY1P1, CTRB1, and PPIAP24. Each is linked with LINC00654 in more than 1 cancer types. Because this analysis shows association rather than direction, both LINC00654-to-partner and partner-to-LINC00654 results are reported.

Each partner links to its own Q-omics profile.

mutation associated genes by consensus

Ranked by combined sampling and lineage consensus. X-score (LINC00654→partner) and Y-score (partner→LINC00654) are standardized regression coefficients; both directions are reported because the association is undirected. p-values are from the association test.

Lineage	Partner gene	X-score	Y-score	p(X)	p(Y)	Sampling consensus	Lineage consensus
UCEC	RNY1P1 →	+0.282	+4.335	.001	.007	3	2
UCEC	CTRB1 →	+0.252	+3.836	.006	.005	3	1
UCEC	PPIAP24 →	+0.182	+3.413	.006	.006	3	1
UCEC	IGKV1OR2-118 →	+0.374	+3.496	<.001	.005	3	1
UCEC	RPS29P32 →	+0.808	+3.599	<.001	.007	3	1
UCEC	LINC02736 →	+0.298	+3.772	.009	.006	3	1

Each partner links to its Q-omics profile. Showing the 6 strongest of 45 associations by consensus.

Exploration

LINC00654 survival (RNA) · tumor vs normal (RNA) · all LINC00654 data types