Across TCGA patient cohorts, LINC00643 RNA expression is significantly associated with the protein abundance of many other proteins, with 12,728 significant associations in total. GBM shows the largest number of these associations.

The most reproducible LINC00643-associated proteins across cancer lineages are SCG2_S533, PPP1R21, and PRKACB. Each is linked with LINC00643 in more than 3 cancer types. Because this analysis shows association rather than direction, both LINC00643-to-partner and partner-to-LINC00643 results are reported.

Each partner links to its own Q-omics profile.

RNA expression associated proteins by consensus

Ranked by combined sampling and lineage consensus. X-score (LINC00643→partner) and Y-score (partner→LINC00643) are standardized regression coefficients; both directions are reported because the association is undirected. p-values are from the association test.

Lineage	Partner protein	X-score	Y-score	p(X)	p(Y)	Sampling consensus	Lineage consensus
LUAD	SCG2_S533 →	+1.091	+0.131	.005	.003	3	4
PDAC	PPP1R21 →	+0.195	+1.410	<.001	<.001	3	3
LSCC	PRKACB →	+0.359	+0.085	.001	.001	3	3
GBM	SPTAN1 →	+0.266	+0.786	<.001	<.001	3	3
LSCC	SYNE1 →	+0.381	+0.079	<.001	.002	3	3
LUAD	TRIM28_S697 →	-0.885	-0.182	<.001	<.001	3	3

Each partner links to its Q-omics profile. Showing the 6 strongest of 12,728 associations by consensus.

Exploration

LINC00643 survival (RNA) · tumor vs normal (RNA) · all LINC00643 data types