LINC00563

Across TCGA patient cohorts, LINC00563 RNA expression is significantly associated with the go_rna of many other GO terms, with 7,007 significant associations in total. STAD shows the largest number of these associations.

The most reproducible LINC00563-associated GO terms across cancer lineages are B cell activation involved in immune response, Immunoglobulin production involved in immunoglobulin-mediated immune response, and Positive regulation of immune effector process. Each is linked with LINC00563 in more than 14 cancer types. Because this analysis shows association rather than direction, both LINC00563-to-partner and partner-to-LINC00563 results are reported.

Each partner links to its own Q-omics profile. The box plot shows the strongest example, B cell activation involved in immune response grouped by LINC00563-low versus LINC00563-high in STAD.

RNA expression associated GO terms by consensus

Ranked by combined sampling and lineage consensus. X-score (LINC00563→partner) and Y-score (partner→LINC00563) are standardized regression coefficients; both directions are reported because the association is undirected. p-values are from the association test.

Lineage	Partner GO term	X-score	Y-score	p(X)	p(Y)	Sampling consensus	Lineage consensus
STAD	B cell activation involved in immune response →	+0.044	+0.113	<.001	<.001	3	15
ESCA	Immunoglobulin production involved in immunoglobulin-mediated immune response →	+0.056	+0.127	<.001	.003	3	15
STAD	Positive regulation of immune effector process →	+0.043	+0.136	<.001	<.001	3	15
STAD	Positive regulation of type I interferon production →	+0.047	+0.112	<.001	<.001	3	15
STAD	Interleukin-12 production →	+0.056	+0.120	<.001	<.001	3	15
STAD	Alpha-beta T cell activation →	+0.057	+0.121	<.001	<.001	3	15

Each partner links to its Q-omics profile. Showing the 6 strongest of 7,007 associations by consensus.

B cell activation involved in immune response by LINC00563 expression — STAD

Explore this box plot interactively →