LINC00558

Across TCGA patient cohorts, LINC00558 RNA expression is significantly associated with the go_rna of many other GO terms, with 6,106 significant associations in total. STAD shows the largest number of these associations.

The most reproducible LINC00558-associated GO terms across cancer lineages are tRNA metabolic process, DNA-templated transcription elongation, and Positive regulation of peptidase activity. Each is linked with LINC00558 in more than 10 cancer types. Because this analysis shows association rather than direction, both LINC00558-to-partner and partner-to-LINC00558 results are reported.

Each partner links to its own Q-omics profile. The box plot shows the strongest example, tRNA metabolic process grouped by LINC00558-low versus LINC00558-high in STAD.

RNA expression associated GO terms by consensus

Ranked by combined sampling and lineage consensus. X-score (LINC00558→partner) and Y-score (partner→LINC00558) are standardized regression coefficients; both directions are reported because the association is undirected. p-values are from the association test.

Lineage	Partner GO term	X-score	Y-score	p(X)	p(Y)	Sampling consensus	Lineage consensus
STAD	tRNA metabolic process →	+0.088	+0.055	<.001	<.001	3	11
STAD	DNA-templated transcription elongation →	+0.096	+0.059	<.001	<.001	3	10
STAD	Positive regulation of peptidase activity →	+0.076	+0.056	<.001	<.001	3	9
STAD	Methylation →	+0.080	+0.066	<.001	<.001	3	9
STAD	Regulation of transcription elongation by RNA polymerase II →	+0.094	+0.054	<.001	<.001	3	9
STAD	Dendritic spine development →	+0.056	+0.052	<.001	<.001	3	9

Each partner links to its Q-omics profile. Showing the 6 strongest of 6,106 associations by consensus.

tRNA metabolic process by LINC00558 expression — STAD

Explore this box plot interactively →