LINC00556

Across TCGA patient cohorts, LINC00556 RNA expression is significantly associated with the go_rna of many other GO terms, with 4,807 significant associations in total. LUSC shows the largest number of these associations.

The most reproducible LINC00556-associated GO terms across cancer lineages are Gap junction-mediated intercellular transport, Forebrain morphogenesis, and Regulation of somatic stem cell population maintenance. Each is linked with LINC00556 in more than 10 cancer types. Because this analysis shows association rather than direction, both LINC00556-to-partner and partner-to-LINC00556 results are reported.

Each partner links to its own Q-omics profile. The box plot shows the strongest example, Gap junction-mediated intercellular transport grouped by LINC00556-low versus LINC00556-high in SARC.

RNA expression associated GO terms by consensus

Ranked by combined sampling and lineage consensus. X-score (LINC00556→partner) and Y-score (partner→LINC00556) are standardized regression coefficients; both directions are reported because the association is undirected. p-values are from the association test.

Lineage	Partner GO term	X-score	Y-score	p(X)	p(Y)	Sampling consensus	Lineage consensus
SARC	Gap junction-mediated intercellular transport →	+0.392	+0.137	<.001	<.001	3	11
ESCA	Forebrain morphogenesis →	+0.072	+0.250	<.001	<.001	3	7
ESCA	Regulation of somatic stem cell population maintenance →	+0.075	+0.252	<.001	<.001	3	7
OV	Cellular response to glucagon stimulus →	+0.121	+0.041	<.001	.001	3	7
ESCA	Keratinocyte differentiation →	+0.059	+0.246	<.001	<.001	3	7
TGCT	Keratinocyte proliferation →	+0.053	+0.044	<.001	.003	3	7

Each partner links to its Q-omics profile. Showing the 6 strongest of 4,807 associations by consensus.

Gap junction-mediated intercellular transport by LINC00556 expression — SARC

Explore this box plot interactively →