LINC00555

Across TCGA patient cohorts, LINC00555 RNA expression is significantly associated with the RNA expression of many other genes, with 4,023 significant associations in total. TGCT shows the largest number of these associations.

The most reproducible LINC00555-associated genes across cancer lineages are B3GNT10, LIG4, and TPP2. Each is linked with LINC00555 in more than 14 cancer types. Because this analysis shows association rather than direction, both LINC00555-to-partner and partner-to-LINC00555 results are reported.

Each partner links to its own Q-omics profile. The scatter plot shows the strongest example, LINC00555 versus B3GNT10 in TGCT, with a Pearson correlation of 0.35.

RNA expression associated genes by consensus

Ranked by combined sampling and lineage consensus. X-score (LINC00555→partner) and Y-score (partner→LINC00555) are standardized regression coefficients; both directions are reported because the association is undirected. p-values are from the association test.

Lineage	Partner gene	X-score	Y-score	p(X)	p(Y)	Sampling consensus	Lineage consensus
TGCT	B3GNT10 →	+1.363	+0.027	<.001	.001	3	14
SKCM	LIG4 →	+0.582	+0.038	<.001	<.001	3	13
LIHC	TPP2 →	+0.545	+0.036	<.001	<.001	3	13
TGCT	DEPDC5 →	+0.552	+0.027	.009	.001	1	15
SKCM	LTN1 →	+0.653	+0.051	<.001	<.001	3	12
UCS	UPF3A →	+0.815	+0.108	<.001	.001	3	12

Each partner links to its Q-omics profile. Showing the 6 strongest of 4,023 associations by consensus.

LINC00555 vs B3GNT10 — TGCT

Explore this scatter interactively →