LINC00476

Across TCGA patient cohorts, LINC00476 RNA expression is significantly associated with the protein abundance of many other proteins, with 14,585 significant associations in total. GBM shows the largest number of these associations.

The most reproducible LINC00476-associated proteins across cancer lineages are SMARCA2, GABPA, and JPT1. Each is linked with LINC00476 in more than 6 cancer types. Because this analysis shows association rather than direction, both LINC00476-to-partner and partner-to-LINC00476 results are reported.

Each partner links to its own Q-omics profile. The scatter plot shows the strongest example, LINC00476 versus SMARCA2 in LSCC, with a Pearson correlation of 0.28.

RNA expression associated proteins by consensus

Ranked by combined sampling and lineage consensus. X-score (LINC00476→partner) and Y-score (partner→LINC00476) are standardized regression coefficients; both directions are reported because the association is undirected. p-values are from the association test.

Lineage	Partner protein	X-score	Y-score	p(X)	p(Y)	Sampling consensus	Lineage consensus
LSCC	SMARCA2 →	+0.278	+0.473	.008	<.001	2	7
LSCC	GABPA →	+0.246	+0.564	<.001	<.001	3	5
PDAC	JPT1 →	-0.372	-0.431	<.001	<.001	3	5
UCEC	PTPA →	+0.363	+0.835	<.001	<.001	3	5
PDAC	TPI1_S80 →	-0.844	-0.465	<.001	<.001	3	5
CCRCC	PTPN1 →	-0.442	-0.553	<.001	<.001	3	5

Each partner links to its Q-omics profile. Showing the 6 strongest of 14,585 associations by consensus.

LINC00476 vs SMARCA2 — LSCC

Explore this scatter interactively →