LINC00407

Across TCGA patient cohorts, LINC00407 RNA expression is significantly associated with the protein abundance of many other proteins, with 9,445 significant associations in total. GBM shows the largest number of these associations.

The most reproducible LINC00407-associated proteins across cancer lineages are TLN2, TSC22D1, and GNAS. Each is linked with LINC00407 in more than 2 cancer types. Because this analysis shows association rather than direction, both LINC00407-to-partner and partner-to-LINC00407 results are reported.

Each partner links to its own Q-omics profile. The scatter plot shows the strongest example, LINC00407 versus TLN2 in GBM, with a Pearson correlation of 0.35.

RNA expression associated proteins by consensus

Ranked by combined sampling and lineage consensus. X-score (LINC00407→partner) and Y-score (partner→LINC00407) are standardized regression coefficients; both directions are reported because the association is undirected. p-values are from the association test.

Lineage	Partner protein	X-score	Y-score	p(X)	p(Y)	Sampling consensus	Lineage consensus
GBM	TLN2 →	+0.323	+0.779	<.001	.001	3	3
COAD	TSC22D1 →	+0.475	+0.162	<.001	.002	3	3
GBM	GNAS →	+0.259	+0.649	.003	.001	3	3
LSCC	SCARF2_S653 →	+0.444	+0.321	.004	<.001	3	3
GBM	ITSN1 →	+0.233	+0.729	<.001	<.001	3	3
PDAC	ZNF263_S178 →	-0.620	-0.633	<.001	<.001	3	2

Each partner links to its Q-omics profile. Showing the 6 strongest of 9,445 associations by consensus.

LINC00407 vs TLN2 — GBM

Explore this scatter interactively →