Across TCGA patient cohorts, LINC00393 RNA expression is significantly associated with the protein abundance of many other proteins, with 10,012 significant associations in total. GBM shows the largest number of these associations.

The most reproducible LINC00393-associated proteins across cancer lineages are UBE2S, USP39, and VGLL4. Each is linked with LINC00393 in more than 3 cancer types. Because this analysis shows association rather than direction, both LINC00393-to-partner and partner-to-LINC00393 results are reported.

Each partner links to its own Q-omics profile.

RNA expression associated proteins by consensus

Ranked by combined sampling and lineage consensus. X-score (LINC00393→partner) and Y-score (partner→LINC00393) are standardized regression coefficients; both directions are reported because the association is undirected. p-values are from the association test.

Lineage	Partner protein	X-score	Y-score	p(X)	p(Y)	Sampling consensus	Lineage consensus
BRCA	UBE2S →	+0.564	+0.297	<.001	.005	3	4
BRCA	USP39 →	+0.239	+0.330	<.001	.002	3	4
GBM	VGLL4 →	+0.344	+0.255	<.001	<.001	3	4
GBM	LRRFIP1 →	-0.318	-0.275	<.001	<.001	3	4
GBM	ATAD2 →	+0.461	+0.280	<.001	<.001	3	4
LSCC	MDN1 →	+0.332	+1.648	<.001	<.001	3	4

Each partner links to its Q-omics profile. Showing the 6 strongest of 10,012 associations by consensus.

Exploration

LINC00393 survival (RNA) · tumor vs normal (RNA) · all LINC00393 data types