LINC00299

Across TCGA patient cohorts, LINC00299 mutation is significantly associated with the RNA expression of many other genes, with 404 significant associations in total. UCEC shows the largest number of these associations.

The most reproducible LINC00299-associated genes across cancer lineages are SLC25A15P4, CA15P2, and NPAP1L. Each is linked with LINC00299 in more than 1 cancer types. Because this analysis shows association rather than direction, both LINC00299-to-partner and partner-to-LINC00299 results are reported.

Each partner links to its own Q-omics profile. The box plot shows the strongest example, SLC25A15P4 grouped by LINC00299-low versus LINC00299-high in BRCA.

mutation associated genes by consensus

Ranked by combined sampling and lineage consensus. X-score (LINC00299→partner) and Y-score (partner→LINC00299) are standardized regression coefficients; both directions are reported because the association is undirected. p-values are from the association test.

Lineage	Partner gene	X-score	Y-score	p(X)	p(Y)	Sampling consensus	Lineage consensus
BRCA	SLC25A15P4 →	+0.430	+5.045	<.001	.009	3	1
BRCA	CA15P2 →	+0.047	+5.122	.005	.008	3	1
BRCA	NPAP1L →	+0.073	+5.441	.001	.005	3	1
BRCA	RNU6-1299P →	+0.333	+5.721	.001	.003	3	1
BRCA	RNA5SP271 →	+0.633	+5.148	<.001	.008	3	1
BRCA	RNA5SP481 →	+0.278	+5.441	<.001	.005	3	1

Each partner links to its Q-omics profile. Showing the 6 strongest of 404 associations by consensus.

SLC25A15P4 by LINC00299 expression — BRCA

Explore this box plot interactively →