LINC00254

Across TCGA patient cohorts, LINC00254 RNA expression is significantly associated with the RNA expression of many other genes, with 6,246 significant associations in total. COAD shows the largest number of these associations.

The most reproducible LINC00254-associated genes across cancer lineages are IZUMO3, LINC02124, and LINC01646. Each is linked with LINC00254 in more than 11 cancer types. Because this analysis shows association rather than direction, both LINC00254-to-partner and partner-to-LINC00254 results are reported.

Each partner links to its own Q-omics profile. The scatter plot shows the strongest example, LINC00254 versus IZUMO3 in TGCT, with a Pearson correlation of 0.94.

RNA expression associated genes by consensus

Ranked by combined sampling and lineage consensus. X-score (LINC00254→partner) and Y-score (partner→LINC00254) are standardized regression coefficients; both directions are reported because the association is undirected. p-values are from the association test.

Lineage	Partner gene	X-score	Y-score	p(X)	p(Y)	Sampling consensus	Lineage consensus
TGCT	IZUMO3 →	+0.633	+0.049	<.001	.005	3	12
ESCA	LINC02124 →	+0.675	+0.112	<.001	<.001	3	12
DLBC	LINC01646 →	+0.557	+0.255	<.001	<.001	3	12
DLBC	RNU1-55P →	+0.708	+0.192	<.001	<.001	3	12
DLBC	LINC00293 →	+0.503	+0.120	<.001	.001	3	12
DLBC	MIR4422 →	+0.683	+0.166	.003	.003	3	12

Each partner links to its Q-omics profile. Showing the 6 strongest of 6,246 associations by consensus.

LINC00254 vs IZUMO3 — TGCT

Explore this scatter interactively →