LINC00239

Across TCGA patient cohorts, LINC00239 RNA expression is significantly associated with the protein abundance of many other proteins, with 7,756 significant associations in total. BRCA shows the largest number of these associations.

The most reproducible LINC00239-associated proteins across cancer lineages are SERPINB9, GMIP, and IL16. Each is linked with LINC00239 in more than 3 cancer types. Because this analysis shows association rather than direction, both LINC00239-to-partner and partner-to-LINC00239 results are reported.

Each partner links to its own Q-omics profile. The scatter plot shows the strongest example, LINC00239 versus SERPINB9 in UCEC, with a Pearson correlation of 0.25.

RNA expression associated proteins by consensus

Ranked by combined sampling and lineage consensus. X-score (LINC00239→partner) and Y-score (partner→LINC00239) are standardized regression coefficients; both directions are reported because the association is undirected. p-values are from the association test.

Lineage	Partner protein	X-score	Y-score	p(X)	p(Y)	Sampling consensus	Lineage consensus
UCEC	SERPINB9 →	+0.448	+0.504	<.001	.002	3	4
CCRCC	GMIP →	+0.320	+0.401	<.001	<.001	3	4
LSCC	IL16 →	+0.465	+0.390	.002	.006	3	4
LSCC	INPP5D_S243 →	+0.697	+0.493	<.001	<.001	3	4
CCRCC	NCF2 →	+0.506	+0.465	<.001	<.001	3	4
OV	S100A13 →	+0.605	+0.631	<.001	<.001	3	4

Each partner links to its Q-omics profile. Showing the 6 strongest of 7,756 associations by consensus.

LINC00239 vs SERPINB9 — UCEC

Explore this scatter interactively →