LINC00239

Across TCGA pan-cancer cohorts, LINC00239 RNA is linked to patient survival in 21 of 34 cancer types, making it the most broadly survival-associated LINC00239 data layer.

The strongest signal is observed in kidney renal clear cell carcinoma (KIRC), where higher LINC00239 RNA is associated with worse overall survival. In most high-consensus cancer types, elevated LINC00239 expression acts as an unfavorable survival marker, although some lineages such as OV and UCEC show a favorable association.

KIRC, UVM, and OV are the cancer types where LINC00239 RNA most reproducibly stratifies survival.

RNA survival associations by lineage

Ranked by sampling consensus. AUC1 and AUC2 indicate survival in the high- and low-expression groups, respectively; the lower AUC marks the poorer-surviving group. p-values are from the log-rank test.

Lineage	Measure	Split	Stage	AUC1 high	AUC2 low	p	Sampling consensus
KIRC	OS	Tertile	All	0.574	0.704	.001	97	view →
UVM	OS	Median	All	0.407	0.733	<.001	94	view →
OV	OS	Median	II,III,IV	0.895	0.788	<.001	42	view →
COAD	DFS	Median	II,III,IV	0.353	0.705	<.001	42	view →
UCEC	DFS	Quartile	II,III,IV	0.853	0.699	.007	36	view →
LGG	DFS	Median	All	0.302	0.463	.001	34	view →
GBM	DFS	Quartile	All	0.140	0.337	<.001	33	view →
SKCM	OS	Median	IV	0.868	0.254	.006	32	view →
KIRP	DFS	Quartile	All	0.582	0.950	.011	26	view →
LIHC	OS	Median	III,IV	0.451	0.718	.013	19	view →
HNSC	DFS	Median	II,III,IV	0.776	0.540	<.001	17	view →
THCA	DFS	Tertile	All	0.945	0.717	<.001	15	view →

Pink = unfavorable, green = favorable. Showing the 12 strongest of 21 lineages.

LINC00239–KIRC (OS)

Open the KIRC breakdown →