KCNIP3

Across TCGA patient cohorts, KCNIP3 mutation is significantly associated with the RNA expression of many other genes, with 1,078 significant associations in total. UCEC shows the largest number of these associations.

The most reproducible KCNIP3-associated genes across cancer lineages are LINC01922, MIR4769, and RPS29P15. Each is linked with KCNIP3 in more than 1 cancer types. Because this analysis shows association rather than direction, both KCNIP3-to-partner and partner-to-KCNIP3 results are reported.

Each partner links to its own Q-omics profile. The box plot shows the strongest example, LINC01922 grouped by KCNIP3-low versus KCNIP3-high in SKCM.

mutation associated genes by consensus

Ranked by combined sampling and lineage consensus. X-score (KCNIP3→partner) and Y-score (partner→KCNIP3) are standardized regression coefficients; both directions are reported because the association is undirected. p-values are from the association test.

Lineage	Partner gene	X-score	Y-score	p(X)	p(Y)	Sampling consensus	Lineage consensus
SKCM	LINC01922 →	+0.054	+3.819	<.001	.009	3	2
SKCM	MIR4769 →	+0.300	+4.614	<.001	.006	3	2
LUAD	RPS29P15 →	+0.490	+4.339	<.001	<.001	3	2
LUAD	FXYD6P1 →	+0.187	+3.473	<.001	.006	3	2
LUAD	RN7SL248P →	+0.058	+4.263	<.001	.007	3	2
LUSC	RNA5SP237 →	+0.587	+4.419	<.001	.006	3	2

Each partner links to its Q-omics profile. Showing the 6 strongest of 1,078 associations by consensus.

LINC01922 by KCNIP3 expression — SKCM

Explore this box plot interactively →