IGHV3-23

mutation — cross-omics
Cross-omicsMUTATION → RNAPatientPairwise association · TCGA cohorts

Across TCGA patient cohorts, IGHV3-23 mutation is significantly associated with the RNA expression of many other genes, with 1,408 significant associations in total. UCEC shows the largest number of these associations.

The most reproducible IGHV3-23-associated genes across cancer lineages are HINT1, MIR4681, and EEF1E1-BLOC1S5. Each is linked with IGHV3-23 in more than 1 cancer types. Because this analysis shows association rather than direction, both IGHV3-23-to-partner and partner-to-IGHV3-23 results are reported.

Each partner links to its own Q-omics profile.

mutation associated genes by consensus

Ranked by combined sampling and lineage consensus. X-score (IGHV3-23→partner) and Y-score (partner→IGHV3-23) are standardized regression coefficients; both directions are reported because the association is undirected. p-values are from the association test.
LineagePartner geneX-scoreY-scorep(X)p(Y)Sampling consensusLineage consensus
UCECHINT1 →+0.583+3.213.005.00932
SKCMMIR4681 →+0.253+3.140<.001.00832
LUSCEEF1E1-BLOC1S5 →+0.058+3.748<.001.00832
UCECMIR5582 →+0.572+2.717<.001.00232
UCECPRMT3 →+0.888+3.470<.001.00332
UCECTEAD1 →+0.914+3.459.001.00532
Each partner links to its Q-omics profile. Showing the 6 strongest of 1,408 associations by consensus.

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