HR

protein abundance — cross-omics
Cross-omicsPROTEIN-MS → RNAPatientPairwise association · TCGA cohorts

Across TCGA patient cohorts, HR protein abundance is significantly associated with the RNA expression of many other genes, with 328 significant associations in total. GBM shows the largest number of these associations.

The most reproducible HR-associated genes across cancer lineages are MANBAL, RNF128, and SORBS2. Each is linked with HR in more than 1 cancer types. Because this analysis shows association rather than direction, both HR-to-partner and partner-to-HR results are reported.

Each partner links to its own Q-omics profile. The scatter plot shows the strongest example, HR versus MANBAL in BRCA, with a Pearson correlation of 0.63.

protein abundance associated genes by consensus

Ranked by combined sampling and lineage consensus. X-score (HR→partner) and Y-score (partner→HR) are standardized regression coefficients; both directions are reported because the association is undirected. p-values are from the association test.
LineagePartner geneX-scoreY-scorep(X)p(Y)Sampling consensusLineage consensus
BRCAMANBAL →+0.427+0.535.001.00931
BRCARNF128 →-1.020-0.637.006<.00131
BRCASORBS2 →-2.327-0.803.002.00131
BRCAU2AF1 →-0.892-0.758.003.00231
BRCATM2D2 →+0.929+0.782<.001.00431
BRCAPRR13 →+0.687+0.785<.001<.00131
Each partner links to its Q-omics profile. Showing the 6 strongest of 328 associations by consensus.

HR vs MANBAL — BRCA

Per-sample scatter of HR vs MANBAL in BRCA (Pearson r = 0.63).

Explore this scatter interactively →

Exploration