HMGN3-AS1

Across TCGA patient cohorts, HMGN3-AS1 RNA expression is significantly associated with the RNA expression of many other genes, with 20,676 significant associations in total. ACC shows the largest number of these associations.

The most reproducible HMGN3-AS1-associated genes across cancer lineages are CASP8AP2, PPP4R3B, and SENP6. Each is linked with HMGN3-AS1 in more than 32 cancer types. Because this analysis shows association rather than direction, both HMGN3-AS1-to-partner and partner-to-HMGN3-AS1 results are reported.

Each partner links to its own Q-omics profile. The scatter plot shows the strongest example, HMGN3-AS1 versus CASP8AP2 in UVM, with a Pearson correlation of 0.79.

RNA expression associated genes by consensus

Ranked by combined sampling and lineage consensus. X-score (HMGN3-AS1→partner) and Y-score (partner→HMGN3-AS1) are standardized regression coefficients; both directions are reported because the association is undirected. p-values are from the association test.

Lineage	Partner gene	X-score	Y-score	p(X)	p(Y)	Sampling consensus	Lineage consensus
UVM	CASP8AP2 →	+1.076	+0.762	<.001	<.001	3	33
UVM	PPP4R3B →	+1.400	+0.730	<.001	<.001	3	32
UVM	SENP6 →	+1.449	+0.678	<.001	<.001	3	32
UVM	DCAF17 →	+1.084	+0.728	<.001	<.001	3	32
UVM	GTF3C3 →	+0.911	+0.599	<.001	<.001	3	32
UVM	ORC3 →	+1.141	+0.639	<.001	<.001	3	32

Each partner links to its Q-omics profile. Showing the 6 strongest of 20,676 associations by consensus.

HMGN3-AS1 vs CASP8AP2 — UVM

Explore this scatter interactively →