HMGN3-AS1

Across TCGA patient cohorts, HMGN3-AS1 RNA expression is significantly associated with the protein abundance of many other proteins, with 11,886 significant associations in total. LSCC shows the largest number of these associations.

The most reproducible HMGN3-AS1-associated proteins across cancer lineages are PHIP, BCLAF1, and PM20D2. Each is linked with HMGN3-AS1 in more than 6 cancer types. Because this analysis shows association rather than direction, both HMGN3-AS1-to-partner and partner-to-HMGN3-AS1 results are reported.

Each partner links to its own Q-omics profile. The scatter plot shows the strongest example, HMGN3-AS1 versus PHIP in HNSC, with a Pearson correlation of 0.46.

RNA expression associated proteins by consensus

Ranked by combined sampling and lineage consensus. X-score (HMGN3-AS1→partner) and Y-score (partner→HMGN3-AS1) are standardized regression coefficients; both directions are reported because the association is undirected. p-values are from the association test.

Lineage	Partner protein	X-score	Y-score	p(X)	p(Y)	Sampling consensus	Lineage consensus
HNSC	PHIP →	+0.363	+0.662	<.001	<.001	3	7
GBM	BCLAF1 →	+0.256	+0.270	<.001	<.001	3	5
BRCA	PM20D2 →	+0.650	+0.334	<.001	<.001	3	5
GBM	SYNCRIP →	+0.381	+0.456	<.001	<.001	3	5
GBM	KDM3B →	+0.292	+0.335	.001	.007	3	5
OV	ZMYM4_S1071 →	+0.663	+0.632	.001	<.001	3	4

Each partner links to its Q-omics profile. Showing the 6 strongest of 11,886 associations by consensus.

HMGN3-AS1 vs PHIP — HNSC

Explore this scatter interactively →