HMGB1P13

RNA expression — cross-omics
Cross-omicsRNA → PROTEIN-MSPatientPairwise association · TCGA cohorts

Across TCGA patient cohorts, HMGB1P13 RNA expression is significantly associated with the protein abundance of many other proteins, with 2,567 significant associations in total. GBM shows the largest number of these associations.

The most reproducible HMGB1P13-associated proteins across cancer lineages are SEC14L1_S578, AHNAK_T376, and AKAP12_S504. Each is linked with HMGB1P13 in more than 1 cancer types. Because this analysis shows association rather than direction, both HMGB1P13-to-partner and partner-to-HMGB1P13 results are reported.

Each partner links to its own Q-omics profile.

RNA expression associated proteins by consensus

Ranked by combined sampling and lineage consensus. X-score (HMGB1P13→partner) and Y-score (partner→HMGB1P13) are standardized regression coefficients; both directions are reported because the association is undirected. p-values are from the association test.
LineagePartner proteinX-scoreY-scorep(X)p(Y)Sampling consensusLineage consensus
HNSCSEC14L1_S578 →-0.520-0.505<.001.00632
GBMAHNAK_T376 →-0.456-0.443.005.00432
CCRCCAKAP12_S504 →-0.811-0.147<.001.00232
OVSLC15A4_S298 →+1.217+0.092.009.00832
GBMPTBP2 →+0.784+0.484<.001<.00132
OVASL →-0.407-0.102.004.00132
Each partner links to its Q-omics profile. Showing the 6 strongest of 2,567 associations by consensus.

Exploration