GPRC5D

mutation — cross-omics
Cross-omicsMUTATION → RNACell-linePairwise association · TCGA cohorts

Across TCGA cell cohorts, GPRC5D mutation is significantly associated with the RNA expression of many other genes, with 10 significant associations in total. BLOOD_Leukemia shows the largest number of these associations.

The most reproducible GPRC5D-associated genes across cancer lineages are CCL18, ACER1, and INSL5. Each is linked with GPRC5D in more than 1 cancer types. Because this analysis shows association rather than direction, both GPRC5D-to-partner and partner-to-GPRC5D results are reported.

Each partner links to its own Q-omics profile. The box plot shows the strongest example, CCL18 grouped by GPRC5D-low versus GPRC5D-high in LUNG_NSCLC_LUSC.

mutation associated genes by consensus

Ranked by combined sampling and lineage consensus. X-score (GPRC5D→partner) and Y-score (partner→GPRC5D) are standardized regression coefficients; both directions are reported because the association is undirected. p-values are from the association test.
LineagePartner geneX-scoreY-scorep(X)p(Y)Sampling consensusLineage consensus
LUNG_NSCLC_LUSCCCL18 →+0.040+4.643<.001.00831
LARGE_INTESTINEACER1 →+0.083+3.453.003.00931
LARGE_INTESTINEINSL5 →+0.286+3.626<.001.00631
LARGE_INTESTINEOR10W1 →+0.016+3.977<.001.00131
BLOOD_LeukemiaC20orf85 →+0.049+5.969<.001.00131
BLOOD_LeukemiaIL22 →+0.050+6.569<.001<.00131
Each partner links to its Q-omics profile. Showing the 6 strongest of 10 associations by consensus.

CCL18 by GPRC5D expression — LUNG_NSCLC_LUSC

Box plot of CCL18 in GPRC5D-low vs GPRC5D-high samples in LUNG_NSCLC_LUSC.

Explore this box plot interactively →

Exploration