GLYATL1P2

Across TCGA patient cohorts, GLYATL1P2 mutation is significantly associated with the RNA expression of many other genes, with 53 significant associations in total. SKCM shows the largest number of these associations.

The most reproducible GLYATL1P2-associated genes across cancer lineages are BSNDP3, NBEAP5, and MIR6826. Each is linked with GLYATL1P2 in more than 1 cancer types. Because this analysis shows association rather than direction, both GLYATL1P2-to-partner and partner-to-GLYATL1P2 results are reported.

Each partner links to its own Q-omics profile. The box plot shows the strongest example, BSNDP3 grouped by GLYATL1P2-low versus GLYATL1P2-high in SKCM.

mutation associated genes by consensus

Ranked by combined sampling and lineage consensus. X-score (GLYATL1P2→partner) and Y-score (partner→GLYATL1P2) are standardized regression coefficients; both directions are reported because the association is undirected. p-values are from the association test.

Lineage	Partner gene	X-score	Y-score	p(X)	p(Y)	Sampling consensus	Lineage consensus
SKCM	BSNDP3 →	+0.113	+5.488	<.001	.001	3	1
SKCM	NBEAP5 →	+0.107	+3.682	.002	.004	3	1
SKCM	MIR6826 →	+0.545	+3.032	<.001	.009	3	1
SKCM	CRYAA →	+0.040	+3.906	<.001	.001	3	1
SKCM	RHO →	+0.036	+3.288	.003	.004	3	1
SKCM	LRRTM4-AS1 →	+0.051	+3.302	<.001	.009	3	1

Each partner links to its Q-omics profile. Showing the 6 strongest of 53 associations by consensus.

BSNDP3 by GLYATL1P2 expression — SKCM

Explore this box plot interactively →