GARNL3

Across TCGA patient cohorts, GARNL3 RNA expression is significantly associated with the protein abundance of many other proteins, with 21,472 significant associations in total. LSCC shows the largest number of these associations.

The most reproducible GARNL3-associated proteins across cancer lineages are DNAJB11, TMED9, and CALR. Each is linked with GARNL3 in more than 6 cancer types. Because this analysis shows association rather than direction, both GARNL3-to-partner and partner-to-GARNL3 results are reported.

Each partner links to its own Q-omics profile. The scatter plot shows the strongest example, GARNL3 versus DNAJB11 in GBM, with a Pearson correlation of -0.38.

RNA expression associated proteins by consensus

Ranked by combined sampling and lineage consensus. X-score (GARNL3→partner) and Y-score (partner→GARNL3) are standardized regression coefficients; both directions are reported because the association is undirected. p-values are from the association test.

Lineage	Partner protein	X-score	Y-score	p(X)	p(Y)	Sampling consensus	Lineage consensus
GBM	DNAJB11 →	-0.340	-0.584	.005	<.001	3	7
PDAC	TMED9 →	-0.432	-0.306	<.001	<.001	3	7
LSCC	CALR →	-0.300	-0.798	<.001	<.001	3	6
LSCC	DNAJC1 →	-0.381	-0.527	<.001	<.001	3	6
CCRCC	HSP90B1 →	-0.463	-0.615	<.001	<.001	3	6
COAD	BRD3 →	+0.323	+0.402	.002	.001	3	6

Each partner links to its Q-omics profile. Showing the 6 strongest of 21,472 associations by consensus.

GARNL3 vs DNAJB11 — GBM

Explore this scatter interactively →