GARNL3

Across TCGA patient cohorts, GARNL3 protein abundance is significantly associated with the RNA expression of many other genes, with 6,893 significant associations in total. GBM shows the largest number of these associations.

The most reproducible GARNL3-associated genes across cancer lineages are ZCCHC24, CAB39L, and ASPA. Each is linked with GARNL3 in more than 3 cancer types. Because this analysis shows association rather than direction, both GARNL3-to-partner and partner-to-GARNL3 results are reported.

Each partner links to its own Q-omics profile. The scatter plot shows the strongest example, GARNL3 versus ZCCHC24 in BRCA, with a Pearson correlation of 0.43.

protein abundance associated genes by consensus

Ranked by combined sampling and lineage consensus. X-score (GARNL3→partner) and Y-score (partner→GARNL3) are standardized regression coefficients; both directions are reported because the association is undirected. p-values are from the association test.

Lineage	Partner gene	X-score	Y-score	p(X)	p(Y)	Sampling consensus	Lineage consensus
BRCA	ZCCHC24 →	+1.002	+0.782	.003	<.001	3	4
BRCA	CAB39L →	+1.401	+0.920	<.001	<.001	3	3
GBM	ASPA →	+1.069	+0.382	<.001	.001	3	3
UCEC	CNRIP1 →	+0.958	+0.738	<.001	.008	3	3
BRCA	RAI2 →	+1.866	+0.838	<.001	.002	3	3
LUAD	NKD1 →	+1.390	+0.894	.001	.003	3	3

Each partner links to its Q-omics profile. Showing the 6 strongest of 6,893 associations by consensus.

GARNL3 vs ZCCHC24 — BRCA

Explore this scatter interactively →