GARNL3

Across TCGA patient cohorts, GARNL3 mutation is significantly associated with the RNA expression of many other genes, with 4,000 significant associations in total. UCEC shows the largest number of these associations.

The most reproducible GARNL3-associated genes across cancer lineages are RN7SL132P, GABRE, and HSBP1L1. Each is linked with GARNL3 in more than 2 cancer types. Because this analysis shows association rather than direction, both GARNL3-to-partner and partner-to-GARNL3 results are reported.

Each partner links to its own Q-omics profile. The box plot shows the strongest example, RN7SL132P grouped by GARNL3-low versus GARNL3-high in BLCA.

mutation associated genes by consensus

Ranked by combined sampling and lineage consensus. X-score (GARNL3→partner) and Y-score (partner→GARNL3) are standardized regression coefficients; both directions are reported because the association is undirected. p-values are from the association test.

Lineage	Partner gene	X-score	Y-score	p(X)	p(Y)	Sampling consensus	Lineage consensus
BLCA	RN7SL132P →	+0.214	+3.716	<.001	<.001	3	3
UCEC	GABRE →	-0.492	-2.129	.007	<.001	3	3
COAD	HSBP1L1 →	+0.739	+3.584	<.001	.002	3	3
UCEC	RPL4P6 →	+0.299	+1.805	<.001	<.001	3	3
SKCM	RNU6-539P →	+0.317	+2.885	<.001	.003	3	3
BRCA	CDRT15P10 →	+0.453	+3.912	<.001	.004	3	2

Each partner links to its Q-omics profile. Showing the 6 strongest of 4,000 associations by consensus.

RN7SL132P by GARNL3 expression — BLCA

Explore this box plot interactively →