GARNL3

Across TCGA cell cohorts, GARNL3 RNA expression is significantly associated with the go_rna of many other GO terms, with 4,357 significant associations in total. BONE shows the largest number of these associations.

The most reproducible GARNL3-associated GO terms across cancer lineages are Establishment of RNA localization, Nuclear export, and RNA export from nucleus. Each is linked with GARNL3 in more than 13 cancer types. Because this analysis shows association rather than direction, both GARNL3-to-partner and partner-to-GARNL3 results are reported.

Each partner links to its own Q-omics profile. The box plot shows the strongest example, Establishment of RNA localization grouped by GARNL3-low versus GARNL3-high in UPPER_AERODIGESTIVE_TRACT.

RNA expression associated GO terms by consensus

Ranked by combined sampling and lineage consensus. X-score (GARNL3→partner) and Y-score (partner→GARNL3) are standardized regression coefficients; both directions are reported because the association is undirected. p-values are from the association test.

Lineage	Partner GO term	X-score	Y-score	p(X)	p(Y)	Sampling consensus	Lineage consensus
UPPER_AERODIGESTIVE_TRACT	Establishment of RNA localization →	+0.091	+1.317	.008	.001	3	14
PANCREAS	Nuclear export →	+0.092	+1.086	<.001	.001	3	13
PANCREAS	RNA export from nucleus →	+0.113	+0.994	<.001	<.001	3	13
UPPER_AERODIGESTIVE_TRACT	mRNA export from nucleus →	+0.116	+1.176	.005	.002	3	13
BONE	Protein-DNA complex disassembly →	+0.132	+1.010	<.001	<.001	3	13
BONE	Positive regulation of double-strand break repair →	+0.081	+1.306	.002	.001	3	13

Each partner links to its Q-omics profile. Showing the 6 strongest of 4,357 associations by consensus.

Establishment of RNA localization by GARNL3 expression — UPPER_AERODIGESTIVE_TRACT

Explore this box plot interactively →