Across TCGA cell cohorts, GALNT17 mutation is significantly associated with the RNA expression of many other genes, with 115 significant associations in total. LARGE_INTESTINE shows the largest number of these associations.

The most reproducible GALNT17-associated genes across cancer lineages are IL27, HMGN4, and OR4X2. Each is linked with GALNT17 in more than 1 cancer types. Because this analysis shows association rather than direction, both GALNT17-to-partner and partner-to-GALNT17 results are reported.

Each partner links to its own Q-omics profile.

mutation associated genes by consensus

Ranked by combined sampling and lineage consensus. X-score (GALNT17→partner) and Y-score (partner→GALNT17) are standardized regression coefficients; both directions are reported because the association is undirected. p-values are from the association test.

Lineage	Partner gene	X-score	Y-score	p(X)	p(Y)	Sampling consensus	Lineage consensus
LUNG_SCLC	IL27 →	+0.074	+3.232	<.001	.001	3	2
LARGE_INTESTINE	HMGN4 →	+0.510	+2.364	<.001	<.001	3	2
SOFT_TISSUE	OR4X2 →	+0.032	+5.369	<.001	.004	3	1
LUNG_SCLC	IL23R →	+0.224	+3.369	<.001	.005	3	1
LUNG_SCLC	SRY →	+0.205	+3.232	<.001	.001	3	1
CNS	STRA8 →	+0.021	+4.169	<.001	.008	3	1

Each partner links to its Q-omics profile. Showing the 6 strongest of 115 associations by consensus.

Exploration

GALNT17 survival (RNA) · tumor vs normal (RNA) · all GALNT17 data types