Across TCGA pan-cancer cohorts, FAM83E mass-spec protein differs between tumor and matched normal tissue in 3 of 18 cancer types tested, making tumor–normal expression one of FAM83E’s most consistent transcriptional readouts.
The strongest signal is observed in lung squamous cell carcinoma (LSCC), where FAM83E mass-spec protein is repressed in tumor relative to normal tissue. In most cancer types FAM83E is over-expressed in tumor, although a few such as LSCC and HNSC show the opposite, repressed pattern.
LSCC, PDAC, and HNSC are the cancer types where FAM83E tumor–normal differential expression is most reproducible.