DDX39A

protein abundance — cross-omics
Cross-omicsPROTEIN-MS → RNAPatientPairwise association · TCGA cohorts

Across TCGA patient cohorts, DDX39A protein abundance is significantly associated with the RNA expression of many other genes, with 19,611 significant associations in total. LSCC shows the largest number of these associations.

The most reproducible DDX39A-associated genes across cancer lineages are CDKN3, MYBL2, and LMNB1. Each is linked with DDX39A in more than 8 cancer types. Because this analysis shows association rather than direction, both DDX39A-to-partner and partner-to-DDX39A results are reported.

Each partner links to its own Q-omics profile. The scatter plot shows the strongest example, DDX39A versus CDKN3 in UCEC, with a Pearson correlation of 0.68.

protein abundance associated genes by consensus

Ranked by combined sampling and lineage consensus. X-score (DDX39A→partner) and Y-score (partner→DDX39A) are standardized regression coefficients; both directions are reported because the association is undirected. p-values are from the association test.
LineagePartner geneX-scoreY-scorep(X)p(Y)Sampling consensusLineage consensus
UCECCDKN3 →+1.196+0.553<.001<.00139
UCECMYBL2 →+1.580+0.440<.001<.00139
HNSCLMNB1 →+1.133+0.339<.001<.00139
UCECCENPA →+1.440+0.564<.001<.00139
UCECCDC20 →+1.701+0.333<.001<.00139
BRCANEK2 →+1.175+0.500<.001<.00139
Each partner links to its Q-omics profile. Showing the 6 strongest of 19,611 associations by consensus.

DDX39A vs CDKN3 — UCEC

Per-sample scatter of DDX39A vs CDKN3 in UCEC (Pearson r = 0.68).

Explore this scatter interactively →

Exploration