CPNE9

Across TCGA patient cohorts, CPNE9 RNA expression is significantly associated with the protein abundance of many other proteins, with 11,862 significant associations in total. GBM shows the largest number of these associations.

The most reproducible CPNE9-associated proteins across cancer lineages are TMOD2, RPF2, and RPL4. Each is linked with CPNE9 in more than 3 cancer types. Because this analysis shows association rather than direction, both CPNE9-to-partner and partner-to-CPNE9 results are reported.

Each partner links to its own Q-omics profile. The scatter plot shows the strongest example, CPNE9 versus TMOD2 in GBM, with a Pearson correlation of 0.56.

RNA expression associated proteins by consensus

Ranked by combined sampling and lineage consensus. X-score (CPNE9→partner) and Y-score (partner→CPNE9) are standardized regression coefficients; both directions are reported because the association is undirected. p-values are from the association test.

Lineage	Partner protein	X-score	Y-score	p(X)	p(Y)	Sampling consensus	Lineage consensus
GBM	TMOD2 →	+0.443	+0.606	<.001	<.001	3	4
GBM	RPF2 →	-0.413	-0.694	.003	<.001	3	3
GBM	RPL4 →	-0.278	-0.449	<.001	<.001	3	3
GBM	RPL6 →	-0.457	-0.685	.003	<.001	3	3
HNSC	RPS19 →	-0.187	-0.252	<.001	.001	3	3
LUAD	SNX4 →	+0.236	+0.213	.004	<.001	3	3

Each partner links to its Q-omics profile. Showing the 6 strongest of 11,862 associations by consensus.

CPNE9 vs TMOD2 — GBM

Explore this scatter interactively →