CPNE6

protein abundance — cross-omics
Cross-omicsPROTEIN-MS → RNAPatientPairwise association · TCGA cohorts

Across TCGA patient cohorts, CPNE6 protein abundance is significantly associated with the RNA expression of many other genes, with 3,911 significant associations in total. GBM shows the largest number of these associations.

The most reproducible CPNE6-associated genes across cancer lineages are OR7A5, LINC00463, and LDHAL6DP. Each is linked with CPNE6 in more than 1 cancer types. Because this analysis shows association rather than direction, both CPNE6-to-partner and partner-to-CPNE6 results are reported.

Each partner links to its own Q-omics profile. The scatter plot shows the strongest example, CPNE6 versus OR7A5 in GBM, with a Pearson correlation of 0.37.

protein abundance associated genes by consensus

Ranked by combined sampling and lineage consensus. X-score (CPNE6→partner) and Y-score (partner→CPNE6) are standardized regression coefficients; both directions are reported because the association is undirected. p-values are from the association test.
LineagePartner geneX-scoreY-scorep(X)p(Y)Sampling consensusLineage consensus
GBMOR7A5 →+0.612+0.740<.001<.00132
GBMLINC00463 →+0.477+0.686<.001<.00132
GBMLDHAL6DP →+0.901+0.699<.001<.00132
PDACRPSAP75 →+0.607+0.780.001<.00132
GBMCHADL →+1.296+0.807<.001<.00132
CCRCCVTI1B →+0.228+0.448.005.00132
Each partner links to its Q-omics profile. Showing the 6 strongest of 3,911 associations by consensus.

CPNE6 vs OR7A5 — GBM

Per-sample scatter of CPNE6 vs OR7A5 in GBM (Pearson r = 0.37).

Explore this scatter interactively →

Exploration