COPG2

Across TCGA patient cohorts, COPG2 mutation is significantly associated with the RNA expression of many other genes, with 1,295 significant associations in total. UCEC shows the largest number of these associations.

The most reproducible COPG2-associated genes across cancer lineages are LINC01674, PRDX3P3, and OR9A1P. Each is linked with COPG2 in more than 1 cancer types. Because this analysis shows association rather than direction, both COPG2-to-partner and partner-to-COPG2 results are reported.

Each partner links to its own Q-omics profile. The box plot shows the strongest example, LINC01674 grouped by COPG2-low versus COPG2-high in LUAD.

mutation associated genes by consensus

Ranked by combined sampling and lineage consensus. X-score (COPG2→partner) and Y-score (partner→COPG2) are standardized regression coefficients; both directions are reported because the association is undirected. p-values are from the association test.

Lineage	Partner gene	X-score	Y-score	p(X)	p(Y)	Sampling consensus	Lineage consensus
LUAD	LINC01674 →	+0.089	+7.930	<.001	.008	3	2
SKCM	PRDX3P3 →	+0.147	+4.682	<.001	.001	3	1
SKCM	OR9A1P →	+0.050	+3.953	.001	.005	3	1
SKCM	RN7SL310P →	+0.167	+4.495	<.001	.007	3	1
SKCM	RN7SL57P →	+0.218	+4.075	<.001	.004	3	1
SKCM	RN7SL814P →	+0.121	+4.385	<.001	.008	3	1

Each partner links to its Q-omics profile. Showing the 6 strongest of 1,295 associations by consensus.

LINC01674 by COPG2 expression — LUAD

Explore this box plot interactively →