CLIP3

Across TCGA patient cohorts, CLIP3 mutation is significantly associated with the RNA expression of many other genes, with 2,438 significant associations in total. COAD shows the largest number of these associations.

The most reproducible CLIP3-associated genes across cancer lineages are BSNDP1, IGHV1-69D, and LINC01943. Each is linked with CLIP3 in more than 2 cancer types. Because this analysis shows association rather than direction, both CLIP3-to-partner and partner-to-CLIP3 results are reported.

Each partner links to its own Q-omics profile. The box plot shows the strongest example, BSNDP1 grouped by CLIP3-low versus CLIP3-high in CESC.

mutation associated genes by consensus

Ranked by combined sampling and lineage consensus. X-score (CLIP3→partner) and Y-score (partner→CLIP3) are standardized regression coefficients; both directions are reported because the association is undirected. p-values are from the association test.

Lineage	Partner gene	X-score	Y-score	p(X)	p(Y)	Sampling consensus	Lineage consensus
CESC	BSNDP1 →	+0.054	+4.144	<.001	.009	3	3
UCEC	IGHV1-69D →	+2.093	+2.673	<.001	<.001	3	2
UCEC	LINC01943 →	+0.469	+1.797	<.001	.008	3	2
CESC	CXorf51A →	+0.060	+5.584	<.001	.001	3	2
UCEC	IGHV2-70 →	+1.862	+3.321	<.001	<.001	3	2
COAD	SENP3-EIF4A1 →	+0.213	+3.652	<.001	.001	3	2

Each partner links to its Q-omics profile. Showing the 6 strongest of 2,438 associations by consensus.

BSNDP1 by CLIP3 expression — CESC

Explore this box plot interactively →