CETN2

Across TCGA patient cohorts, CETN2 mutation is significantly associated with the RNA expression of many other genes, with 1,919 significant associations in total. UCEC shows the largest number of these associations.

The most reproducible CETN2-associated genes across cancer lineages are LINC02672, PGAP2, and COX15. Each is linked with CETN2 in more than 1 cancer types. Because this analysis shows association rather than direction, both CETN2-to-partner and partner-to-CETN2 results are reported.

Each partner links to its own Q-omics profile. The box plot shows the strongest example, LINC02672 grouped by CETN2-low versus CETN2-high in SKCM.

mutation associated genes by consensus

Ranked by combined sampling and lineage consensus. X-score (CETN2→partner) and Y-score (partner→CETN2) are standardized regression coefficients; both directions are reported because the association is undirected. p-values are from the association test.

Lineage	Partner gene	X-score	Y-score	p(X)	p(Y)	Sampling consensus	Lineage consensus
SKCM	LINC02672 →	+0.108	+4.495	<.001	.007	3	2
UCEC	PGAP2 →	+0.382	+2.425	.008	.002	3	1
UCEC	COX15 →	+0.454	+3.467	.002	.002	3	1
UCEC	INTS4 →	+0.386	+2.931	.001	<.001	3	1
UCEC	TMEM138 →	+0.250	+3.346	.009	.005	3	1
UCEC	CHEK1 →	+0.795	+2.436	<.001	.002	3	1

Each partner links to its Q-omics profile. Showing the 6 strongest of 1,919 associations by consensus.

LINC02672 by CETN2 expression — SKCM

Explore this box plot interactively →