CCDC88B

RNA expression — cross-omics
Cross-omicsRNA → PROTEIN-MSPatientPairwise association · TCGA cohorts

Across TCGA patient cohorts, CCDC88B RNA expression is significantly associated with the protein abundance of many other proteins, with 15,775 significant associations in total. GBM shows the largest number of these associations.

The most reproducible CCDC88B-associated proteins across cancer lineages are ARHGAP45, ARHGDIB, and WAS. Each is linked with CCDC88B in more than 8 cancer types. Because this analysis shows association rather than direction, both CCDC88B-to-partner and partner-to-CCDC88B results are reported.

Each partner links to its own Q-omics profile. The scatter plot shows the strongest example, CCDC88B versus ARHGAP45 in OV, with a Pearson correlation of 0.48.

RNA expression associated proteins by consensus

Ranked by combined sampling and lineage consensus. X-score (CCDC88B→partner) and Y-score (partner→CCDC88B) are standardized regression coefficients; both directions are reported because the association is undirected. p-values are from the association test.
LineagePartner proteinX-scoreY-scorep(X)p(Y)Sampling consensusLineage consensus
OVARHGAP45 →+0.617+0.724<.001<.00139
OVARHGDIB →+0.860+0.746<.001<.00139
UCECWAS →+0.626+0.901<.001<.00139
OVCOTL1 →+0.543+0.815.004<.00139
GBMDOCK8 →+0.594+0.719<.001<.00139
GBMGPSM3 →+0.638+0.670<.001<.00139
Each partner links to its Q-omics profile. Showing the 6 strongest of 15,775 associations by consensus.

CCDC88B vs ARHGAP45 — OV

Per-sample scatter of CCDC88B vs ARHGAP45 in OV (Pearson r = 0.48).

Explore this scatter interactively →

Exploration