CCDC54

Across TCGA cell cohorts, CCDC54 RNA expression is significantly associated with the go_rna of many other GO terms, with 1,006 significant associations in total. BREAST shows the largest number of these associations.

The most reproducible CCDC54-associated GO terms across cancer lineages are Endoplasmic reticulum to Golgi vesicle-mediated transport, Process utilizing autophagic mechanism, and Autophagy. Each is linked with CCDC54 in more than 6 cancer types. Because this analysis shows association rather than direction, both CCDC54-to-partner and partner-to-CCDC54 results are reported.

Each partner links to its own Q-omics profile. The box plot shows the strongest example, Endoplasmic reticulum to Golgi vesicle-mediated transport grouped by CCDC54-low versus CCDC54-high in SOFT_TISSUE.

RNA expression associated GO terms by consensus

Ranked by combined sampling and lineage consensus. X-score (CCDC54→partner) and Y-score (partner→CCDC54) are standardized regression coefficients; both directions are reported because the association is undirected. p-values are from the association test.

Lineage	Partner GO term	X-score	Y-score	p(X)	p(Y)	Sampling consensus	Lineage consensus
SOFT_TISSUE	Endoplasmic reticulum to Golgi vesicle-mediated transport →	+0.065	+0.067	.001	.002	3	7
STOMACH	Process utilizing autophagic mechanism →	+0.072	+0.076	<.001	.008	2	7
STOMACH	Autophagy →	+0.072	+0.076	<.001	.008	2	7
STOMACH	Response to water →	+0.178	+0.057	<.001	.001	3	6
OVARY	Regulation of macroautophagy →	+0.043	+0.080	.001	.008	2	7
OVARY	Golgi vesicle transport →	+0.056	+0.067	<.001	.005	3	5

Each partner links to its Q-omics profile. Showing the 6 strongest of 1,006 associations by consensus.

Endoplasmic reticulum to Golgi vesicle-mediated transport by CCDC54 expression — SOFT_TISSUE

Explore this box plot interactively →