CCDC39

Across TCGA cell cohorts, CCDC39 RNA expression is significantly associated with the RNA expression of many other genes, with 9,970 significant associations in total. UPPER_AERODIGESTIVE_TRACT shows the largest number of these associations.

The most reproducible CCDC39-associated genes across cancer lineages are TTC14, CCDC14, and NKTR. Each is linked with CCDC39 in more than 19 cancer types. Because this analysis shows association rather than direction, both CCDC39-to-partner and partner-to-CCDC39 results are reported.

Each partner links to its own Q-omics profile. The scatter plot shows the strongest example, CCDC39 versus TTC14 in LUNG_NSCLC_LUSC, with a Pearson correlation of 0.85.

RNA expression associated genes by consensus

Ranked by combined sampling and lineage consensus. X-score (CCDC39→partner) and Y-score (partner→CCDC39) are standardized regression coefficients; both directions are reported because the association is undirected. p-values are from the association test.

Lineage	Partner gene	X-score	Y-score	p(X)	p(Y)	Sampling consensus	Lineage consensus
LUNG_NSCLC_LUSC	TTC14 →	+2.027	+0.802	<.001	<.001	3	20
LUNG_SCLC	CCDC14 →	+1.643	+0.795	<.001	<.001	3	17
UPPER_AERODIGESTIVE_TRACT	NKTR →	+2.015	+0.496	<.001	<.001	3	17
UPPER_AERODIGESTIVE_TRACT	CCNL1 →	+1.479	+0.468	<.001	<.001	3	16
URINARY_TRACT	EBLN2 →	+0.971	+0.495	<.001	<.001	3	16
UPPER_AERODIGESTIVE_TRACT	DDX17 →	+1.641	+0.466	<.001	<.001	3	16

Each partner links to its Q-omics profile. Showing the 6 strongest of 9,970 associations by consensus.

CCDC39 vs TTC14 — LUNG_NSCLC_LUSC

Explore this scatter interactively →