CCDC39-AS1

Across TCGA patient cohorts, CCDC39-AS1 RNA expression is significantly associated with the RNA expression of many other genes, with 11,763 significant associations in total. THYM shows the largest number of these associations.

The most reproducible CCDC39-AS1-associated genes across cancer lineages are CCDC39, ZNF214, and MDH1B. Each is linked with CCDC39-AS1 in more than 26 cancer types. Because this analysis shows association rather than direction, both CCDC39-AS1-to-partner and partner-to-CCDC39-AS1 results are reported.

Each partner links to its own Q-omics profile. The scatter plot shows the strongest example, CCDC39-AS1 versus CCDC39 in UVM, with a Pearson correlation of 0.78.

RNA expression associated genes by consensus

Ranked by combined sampling and lineage consensus. X-score (CCDC39-AS1→partner) and Y-score (partner→CCDC39-AS1) are standardized regression coefficients; both directions are reported because the association is undirected. p-values are from the association test.

Lineage	Partner gene	X-score	Y-score	p(X)	p(Y)	Sampling consensus	Lineage consensus
UVM	CCDC39 →	+0.943	+0.381	<.001	.001	2	27
THYM	ZNF214 →	+0.913	+0.210	<.001	<.001	3	25
UCEC	MDH1B →	+0.842	+0.210	<.001	<.001	3	25
UVM	TTC14 →	+1.200	+0.344	<.001	.004	3	25
LIHC	IFT80 →	+0.823	+0.055	<.001	<.001	3	24
UCEC	NME9 →	+0.778	+0.216	<.001	<.001	3	24

Each partner links to its Q-omics profile. Showing the 6 strongest of 11,763 associations by consensus.

CCDC39-AS1 vs CCDC39 — UVM

Explore this scatter interactively →