ABCA9

Across TCGA cell cohorts, ABCA9 RNA expression is significantly associated with the go_rna of many other GO terms, with 1,020 significant associations in total. UPPER_AERODIGESTIVE_TRACT shows the largest number of these associations.

The most reproducible ABCA9-associated GO terms across cancer lineages are Golgi vesicle transport, Chemical synaptic transmission, postsynaptic, and Viral process. Each is linked with ABCA9 in more than 6 cancer types. Because this analysis shows association rather than direction, both ABCA9-to-partner and partner-to-ABCA9 results are reported.

Each partner links to its own Q-omics profile. The box plot shows the strongest example, Golgi vesicle transport grouped by ABCA9-low versus ABCA9-high in UPPER_AERODIGESTIVE_TRACT.

RNA expression associated GO terms by consensus

Ranked by combined sampling and lineage consensus. X-score (ABCA9→partner) and Y-score (partner→ABCA9) are standardized regression coefficients; both directions are reported because the association is undirected. p-values are from the association test.

Lineage	Partner GO term	X-score	Y-score	p(X)	p(Y)	Sampling consensus	Lineage consensus
UPPER_AERODIGESTIVE_TRACT	Golgi vesicle transport →	+0.053	+0.112	.001	.009	3	7
LARGE_INTESTINE	Chemical synaptic transmission, postsynaptic →	-0.067	-0.067	<.001	.008	3	6
UPPER_AERODIGESTIVE_TRACT	Viral process →	+0.096	+0.143	<.001	.002	3	5
BONE	Response to amino acid starvation →	+0.046	+0.467	.006	.007	1	7
BONE	Cellular response to amino acid starvation →	+0.049	+0.471	.003	.006	2	6
UPPER_AERODIGESTIVE_TRACT	Late viral transcription →	+0.113	+0.118	<.001	.004	3	5

Each partner links to its Q-omics profile. Showing the 6 strongest of 1,020 associations by consensus.

Golgi vesicle transport by ABCA9 expression — UPPER_AERODIGESTIVE_TRACT

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