Regulation of sodium ion transmembrane transporter activity

Across TCGA patient cohorts, RNA activity of the Regulation of sodium ion transmembrane transporter activity pathway is significantly associated with the RNA expression of multiple genes, with the GBM cohort showing a particularly strong set of associations.

The most reproducible pathway-associated genes across cancer lineages are ANK3, GJB1, and BLM, each associated with the pathway in up to 6 cancer types. Since the analysis shows associations rather than directional relationships, both pathway-to-partner and partner-to-pathway views are reported.

Each partner is linked to its corresponding Q-omics profile. The scatter plot shows the strongest association, Regulation of sodium ion transmembrane transporter activity activity versus ANK3 in GBM (Pearson r = 0.50).

Pathway-associated genes by consensus

Ranked by combined sampling and lineage consensus. X-score (pathway→partner) and Y-score (partner→pathway) are standardized regression coefficients; both directions are reported because the association is undirected. The reported p-values are derived from the association test.

Lineage	Partner gene	X-score	Y-score	p(X)	p(Y)	Sampling consensus	Lineage consensus
GBM	ANK3 →	+1.371	+1.084	<.001	<.001	3	6
GBM	GJB1 →	+1.489	+1.061	<.001	<.001	3	6
LUAD	BLM →	-0.755	-0.676	<.001	<.001	3	6
LUAD	ATF5 →	-0.576	-0.679	<.001	<.001	3	6
HNSC	CCDC89 →	+0.332	+0.586	.002	.002	3	5
BRCA	GINS4 →	-0.778	-0.526	<.001	.001	3	5

Each partner links to its Q-omics profile. Showing the 6 strongest associations by consensus.

GO:2000649 vs ANK3 — GBM

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