Regulation of apoptotic cell clearance

Across TCGA patient cohorts, RNA activity of the Regulation of apoptotic cell clearance pathway is significantly associated with the RNA expression of multiple genes, with the COAD cohort showing a particularly strong set of associations.

The most reproducible pathway-associated genes across cancer lineages are COLEC12, CXCL12, and MSRB3, each associated with the pathway in up to 8 cancer types. Since the analysis shows associations rather than directional relationships, both pathway-to-partner and partner-to-pathway views are reported.

Each partner is linked to its corresponding Q-omics profile. The scatter plot shows the strongest association, Regulation of apoptotic cell clearance activity versus COLEC12 in COAD (Pearson r = 0.26).

Pathway-associated genes by consensus

Ranked by combined sampling and lineage consensus. X-score (pathway→partner) and Y-score (partner→pathway) are standardized regression coefficients; both directions are reported because the association is undirected. The reported p-values are derived from the association test.

Lineage	Partner gene	X-score	Y-score	p(X)	p(Y)	Sampling consensus	Lineage consensus
COAD	COLEC12 →	+0.803	+0.121	.002	.008	3	8
OV	CXCL12 →	+1.548	+0.140	<.001	<.001	3	7
OV	MSRB3 →	+0.996	+0.141	<.001	<.001	3	7
COAD	FN1 →	+1.244	+0.122	.006	.003	3	7
COAD	SRPX →	+0.798	+0.147	<.001	<.001	3	6
LSCC	CRISPLD2 →	+0.912	+0.145	<.001	<.001	3	6

Each partner links to its Q-omics profile. Showing the 6 strongest associations by consensus.

GO:2000425 vs COLEC12 — COAD

Explore this scatter interactively →