Negative regulation of reactive oxygen species metabolic process

Across TCGA patient cohorts, RNA activity of the Negative regulation of reactive oxygen species metabolic process pathway is significantly associated with the RNA expression of multiple genes, with the OV cohort showing a particularly strong set of associations.

The most reproducible pathway-associated genes across cancer lineages are CACNG4, PCGF3, and BZW2, each associated with the pathway in up to 4 cancer types. Since the analysis shows associations rather than directional relationships, both pathway-to-partner and partner-to-pathway views are reported.

Each partner is linked to its corresponding Q-omics profile. The scatter plot shows the strongest association, Negative regulation of reactive oxygen species metabolic process activity versus CACNG4 in OV (Pearson r = -0.16).

Pathway-associated genes by consensus

Ranked by combined sampling and lineage consensus. X-score (pathway→partner) and Y-score (partner→pathway) are standardized regression coefficients; both directions are reported because the association is undirected. The reported p-values are derived from the association test.

Lineage	Partner gene	X-score	Y-score	p(X)	p(Y)	Sampling consensus	Lineage consensus
OV	CACNG4 →	-1.625	-0.197	.001	.006	3	4
PDAC	PCGF3 →	-0.205	-0.141	.007	.004	3	4
UCEC	BZW2 →	-0.504	-0.144	<.001	.001	3	4
BRCA	MIR6775 →	+0.605	+0.174	.001	<.001	3	4
LUAD	TMEM59 →	-0.381	-0.156	<.001	.007	3	3
LUAD	RPSAP33 →	-0.170	-0.156	.002	<.001	3	3

Each partner links to its Q-omics profile. Showing the 6 strongest associations by consensus.

GO:2000378 vs CACNG4 — OV

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