Negative regulation of amyloid fibril formation

Across TCGA patient cohorts, RNA activity of the Negative regulation of amyloid fibril formation pathway is significantly associated with the RNA expression of multiple genes, with the OV cohort showing a particularly strong set of associations.

The most reproducible pathway-associated genes across cancer lineages are CKAP2, NAP1L5, and MTRF1L, each associated with the pathway in up to 4 cancer types. Since the analysis shows associations rather than directional relationships, both pathway-to-partner and partner-to-pathway views are reported.

Each partner is linked to its corresponding Q-omics profile. The scatter plot shows the strongest association, Negative regulation of amyloid fibril formation activity versus CKAP2 in OV (Pearson r = 0.40).

Pathway-associated genes by consensus

Ranked by combined sampling and lineage consensus. X-score (pathway→partner) and Y-score (partner→pathway) are standardized regression coefficients; both directions are reported because the association is undirected. The reported p-values are derived from the association test.

Lineage	Partner gene	X-score	Y-score	p(X)	p(Y)	Sampling consensus	Lineage consensus
OV	CKAP2 →	+0.545	+0.134	.006	.001	3	3
OV	NAP1L5 →	-0.640	-0.119	.005	.004	3	3
HNSC	MTRF1L →	-0.430	-0.114	.005	.003	3	3
COAD	FAM32BP →	-0.217	-0.091	.006	.002	3	3
UCEC	SLC2A1 →	+0.817	+0.096	.007	.002	3	3
GBM	PLIN2 →	+0.971	+0.203	<.001	<.001	3	3

Each partner links to its Q-omics profile. Showing the 6 strongest associations by consensus.

GO:1905907 vs CKAP2 — OV

Explore this scatter interactively →