Regulation of protein localization to endosome

Across TCGA patient cohorts, RNA activity of the Regulation of protein localization to endosome pathway is significantly associated with the protein abundance of multiple proteins, with the GBM cohort showing a particularly strong set of associations.

The most reproducible pathway-associated proteins across cancer lineages are BCR, SEPTIN4_S432, and MICAL3, each associated with the pathway in up to 5 cancer types. Since the analysis shows associations rather than directional relationships, both pathway-to-partner and partner-to-pathway views are reported.

Each partner is linked to its corresponding Q-omics profile. The scatter plot shows the strongest association, Regulation of protein localization to endosome activity versus BCR in GBM (Pearson r = 0.23).

Pathway-associated proteins by consensus

Ranked by combined sampling and lineage consensus. X-score (pathway→partner) and Y-score (partner→pathway) are standardized regression coefficients; both directions are reported because the association is undirected. The reported p-values are derived from the association test.

Lineage	Partner protein	X-score	Y-score	p(X)	p(Y)	Sampling consensus	Lineage consensus
GBM	BCR →	+0.323	+0.053	.001	.005	3	5
GBM	SEPTIN4_S432 →	+0.995	+0.061	<.001	.007	3	4
GBM	MICAL3 →	+0.543	+0.119	<.001	<.001	3	4
GBM	RPL5 →	-0.282	-0.091	<.001	<.001	3	4
OV	SRRM2_S250 →	-1.342	-0.061	<.001	<.001	3	4
OV	CACNA2D1 →	+0.497	+0.052	.005	.001	3	4

Each partner links to its Q-omics profile. Showing the 6 strongest associations by consensus.

GO:1905666 vs BCR — GBM

Explore this scatter interactively →