Regulation of vascular associated smooth muscle cell differentiation

Across TCGA cell cohorts, RNA activity of the Regulation of vascular associated smooth muscle cell differentiation pathway is significantly associated with the RNA expression of multiple genes, with the BLOOD_Lymphoma cohort showing a particularly strong set of associations.

The most reproducible pathway-associated genes across cancer lineages are ARMC6, SLC43A1, and PXMP2, each associated with the pathway in up to 5 cancer types. Since the analysis shows associations rather than directional relationships, both pathway-to-partner and partner-to-pathway views are reported.

Each partner is linked to its corresponding Q-omics profile. The scatter plot shows the strongest association, Regulation of vascular associated smooth muscle cell differentiation activity versus ARMC6 in BLOOD_Lymphoma (Pearson r = 0.67).

Pathway-associated genes by consensus

Ranked by combined sampling and lineage consensus. X-score (pathway→partner) and Y-score (partner→pathway) are standardized regression coefficients; both directions are reported because the association is undirected. The reported p-values are derived from the association test.

Lineage	Partner gene	X-score	Y-score	p(X)	p(Y)	Sampling consensus	Lineage consensus
BLOOD_Lymphoma	ARMC6 →	+0.882	+0.229	<.001	<.001	3	4
BLOOD_Lymphoma	SLC43A1 →	+2.351	+0.273	.002	<.001	3	4
BLOOD_Lymphoma	PXMP2 →	+0.958	+0.226	.006	.001	2	5
BLOOD_Lymphoma	PERM1 →	-0.772	-0.181	.008	.003	3	4
LIVER	NAPEPLD →	-1.039	-0.476	<.001	.001	3	3
OESOPHAGUS	SAMD1 →	+1.024	+0.227	.004	.003	2	4

Each partner links to its Q-omics profile. Showing the 6 strongest associations by consensus.

GO:1905063 vs ARMC6 — BLOOD_Lymphoma

Explore this scatter interactively →