Regulation of protein localization to cell periphery

Across TCGA patient cohorts, RNA activity of the Regulation of protein localization to cell periphery pathway is significantly associated with the RNA expression of multiple genes, with the BRCA cohort showing a particularly strong set of associations.

The most reproducible pathway-associated genes across cancer lineages are CHMP3, MR1, and ANXA4, each associated with the pathway in up to 2 cancer types. Since the analysis shows associations rather than directional relationships, both pathway-to-partner and partner-to-pathway views are reported.

Each partner is linked to its corresponding Q-omics profile. The scatter plot shows the strongest association, Regulation of protein localization to cell periphery activity versus CHMP3 in BRCA (Pearson r = 0.52).

Pathway-associated genes by consensus

Ranked by combined sampling and lineage consensus. X-score (pathway→partner) and Y-score (partner→pathway) are standardized regression coefficients; both directions are reported because the association is undirected. The reported p-values are derived from the association test.

Lineage	Partner gene	X-score	Y-score	p(X)	p(Y)	Sampling consensus	Lineage consensus
BRCA	CHMP3 →	+0.504	+0.237	<.001	<.001	3	2
BRCA	MR1 →	+0.921	+0.257	.007	<.001	3	2
BRCA	ANXA4 →	+0.477	+0.188	.007	.007	3	2
OV	ITM2B →	+0.902	+0.132	<.001	.002	3	2
COAD	RN7SL141P →	+0.156	+0.154	.004	.002	3	2
BRCA	PROCR →	+1.016	+0.201	.001	<.001	3	1

Each partner links to its Q-omics profile. Showing the 6 strongest associations by consensus.

GO:1904375 vs CHMP3 — BRCA

Explore this scatter interactively →