Regulation of amino acid transmembrane transport

Across TCGA patient cohorts, RNA activity of the Regulation of amino acid transmembrane transport pathway is significantly associated with the protein abundance of multiple proteins, with the PDAC cohort showing a particularly strong set of associations.

The most reproducible pathway-associated proteins across cancer lineages are FKBP9, HTRA3, and CCN1, each associated with the pathway in up to 6 cancer types. Since the analysis shows associations rather than directional relationships, both pathway-to-partner and partner-to-pathway views are reported.

Each partner is linked to its corresponding Q-omics profile. The scatter plot shows the strongest association, Regulation of amino acid transmembrane transport activity versus FKBP9 in PDAC (Pearson r = 0.30).

Pathway-associated proteins by consensus

Ranked by combined sampling and lineage consensus. X-score (pathway→partner) and Y-score (partner→pathway) are standardized regression coefficients; both directions are reported because the association is undirected. The reported p-values are derived from the association test.

Lineage	Partner protein	X-score	Y-score	p(X)	p(Y)	Sampling consensus	Lineage consensus
PDAC	FKBP9 →	+0.247	+0.070	<.001	<.001	3	6
BRCA	HTRA3 →	+0.660	+0.050	<.001	<.001	3	6
OV	CCN1 →	+0.560	+0.035	<.001	.006	3	5
PDAC	FSCN1_S39 →	+0.440	+0.078	.002	<.001	3	5
LUAD	GFPT2 →	+0.614	+0.066	<.001	<.001	3	5
GBM	SCAF1_S548 →	-0.424	-0.074	<.001	<.001	3	5

Each partner links to its Q-omics profile. Showing the 6 strongest associations by consensus.

GO:1903789 vs FKBP9 — PDAC

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